PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2891_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 456aa    MW: 49925.1 Da    PI: 6.0996
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2891_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-12270312754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  RrC2891_p2 270 MAERRRRKKLNDRLYMLRSIVPKiS------KMDRASILGDAIDYLKEL 312
                 79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.904263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-17266340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9269312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-14269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-13270316No hitNo description
Gene3DG3DSA:4.10.280.101.1E-15270325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048737.54E-7385445No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MALHGNGDAV WLNSSGEGIQ EEEEEASWGR NHQEDGGASS LSHYKAHILE ADWFSNQTHP  60
PHVLQNQQDF RFLVGFPFKP NDNLLLDSSS SLAFSLDTSQ PSTFLPSNNK SCLLNVGNAF  120
DFGTDSCFLG QGFGSFTQLR NRELSSVPDV LSAQVNNNLT TLYEGGGGGF TPLELQGAFT  180
SPAKVLNPLE ALSSSGAQPS LFQKRAAMRQ SSETKFWNSE KKLSDDGGEM DEAGNEVSGL  240
HYESDDLNQS VQNRGGGKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSIV PKISKMDRAS  300
ILGDAIDYLK ELLQRINDLH NELESTPTPP GSLPPTPSSF HPLTPTPRAL SCHVKEELCP  360
SSLPSPKGQQ ARVEVRLREG RAVNIHMFCG RRPGLLLATM KALDNLGLDV QQAVISCFNG  420
FVLDVFRAEL CQEGHEILPD QIKAVLLDTA GYAGMI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259277KKKGMPAKNLMAERRRRKK
2271278ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8493730.0JN849373.1 Isatis tinctoria cultivar Songlan 1 inducer of CBF expression 1 protein (ICE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121430.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE20.0ICE1_ARATH; Transcription factor ICE1
TrEMBLM4EZK30.0M4EZK3_BRARP; Uncharacterized protein
STRINGBra034246.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.40.0bHLH family protein